Support for reading from and writing to pipe separated values (
files as used for the PhysioNet Sepsis Challenge.
write_psv(x, dir, na_rows = NULL) read_psv(dir, col_spec = NULL, id_var = "stay_id", index_var = NULL)
Object to write to files
Directory to write the (many) files to or read from
TRUE missing time steps are filled with
FALSE, rows where all data columns entries are missing are removed and
NULL, data is written as-is
A column specification as created by
Name of the id column (IDs are generated from file names)
Optional name of index column (will be coerced to
write_psv() is called for side effects and returns
read_psv() returns an object inheriting from
Data for the PhysioNet Sepsis Challenge is distributed as pipe separated
.psv) files, split into separate files per patient ID, containing
time stamped rows with measured variables as columns. Files are named with
patient IDs and do not contain any patient identifiers as data. Functions
write_psv() can be used to read from and write to such
a data format.
Reyna, M., Josef, C., Jeter, R., Shashikumar, S., Moody, B., Westover, M. B., Sharma, A., Nemati, S., & Clifford, G. (2019). Early Prediction of Sepsis from Clinical Data -- the PhysioNet Computing in Cardiology Challenge 2019 (version 1.0.0). PhysioNet. https://doi.org/10.13026/v64v-d857.